Hi Venkata,
At first I would check the SQL script responsible for getting all valid privileges and profiles for provisioning whether it's result contain also the missing profiles. In past the script contained serious bug which resulted in situation where no ABAP profile selected for provisioning.
Secondly you should check triggers are set on the profiles. I experienced situation where triggers were not set for profiles as part of initial load due to bad setup of Delta definition. Triggers setup you find on the end of initial load job.
Regards,
Jiri